Added in the new files and swapped the theme to my modified version of bootstrap386

docs/Commands/commands.md

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+# Commands
+
+## Manipulating files
+
+Commands that can be used for reading and manipulating files
+
+### tail
+
+`tail` by default reads the last 5 lines of the input file and then exits
+
+| Useful Flags         | Function      |
+| ------------- |:-------------|
+| -n *x*          | Returns the last x lines of a file |
+| -f              | Follows the end of the file, so any new data will be printed out to the screen |
+
+### head
+
+`head` by default reads the first 5 lines of the input file and then exits
+
+| Useful Flags         | Function      |
+| ------------- |:-------------|
+| -n *x*          | Returns the first x lines of a file |
+
+### awk
+
+`awk` is used to extract, layout and modify data using the command line (It is way more then this but its all I use it for)
+
+### sed
+
+`sed` is the '**S**tream **ED**itor' you can use to to modify files via commands and scripts using patterns, an [example](examples/seddnszone.md) can be seen here
+
+| Useful Flags         | Function      |
+| ------------- |:-------------|
+| -i            | In-place, writes the changes to the file |
+| -f            | Use a script file instead of reading the expression from STDIN      |
+
+### grep
+
+`grep` is used to match text in a file, 
+
+| Useful Flags         | Function      |
+| ------------- |:-------------|
+| -o            | Returns only the matched data (Useless without regex really) |
+| -E            | Allows extended regex to be used in the search, [regex info](/regex)|
+| -P            | Allows the use of Perl regex, this uses a different syntax to -E |
+| -i            | Makes the search case insensitive |
+| -r            | Searches files recursively (i.e if you have quite a few files and folders it will search through all of them) |
+| -l            | Returns the filename where the data was matched instead of the matched data |
+
+Some examples of grep usage can be found [here](/examples/grep)
+
+### lsof
+
+`lsof` is a command that will show you what processes have specified file open currently you can see an example [here](/examples/lsof)
+
+## Manipulating the standard input
+
+These commands can be used to manipulate data in the standard input
+
+### rev

docs/Commands/regex.md

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+#Regex
+
+I am by no means an expert when it comes to regex, this document will propbably have some inaccuracies in it but hey it is what it is :)
+
+##What is regex?
+
+Regex is shorthand for regular expressions, it is a system for pattern matching in text, when combined with commands it can be used for quite a lot of things
+
+##Useful regex patterns
+* **.** \- Matches any char
+* **^** \- Matches at the start of a line
+* **$** \- Matches at the end of a line
+* **?** \- Matches once or none
+* **+** \- Matches once or more
+* **\*** \- Matches zero or more times
+* **\d** \- Match any decimal (0-9)
+* **\b** \- Defines a word boundary
+* **{x}** \- Repeat exactly x times
+* **{x, y}** \- Repeat pattern x to y times
+
+##Regex logic
+
+* **|** \- Logical OR, allows pattern1 OR pattern2 to match
+* **(x|y)** \- Matches a group of patterns
+
+I have made a few examples [here](/examples/regexmatch)